You'd probably be much better off curing the actual problem, which is resonance of the door panel itself.
Sound advice (pun intended[
]). It could be that the 'speaker is producing sound at the low natural frequency of a loose panel.....u have to try and find this loose panel. It could also be that you are playing the sound so loud that the 'speaker itself is 'clipping' (reaching it's end stops)...in which case either u will have to get a more powerful amp or more powerful 'speakers or both.
They are top end home and auto audio installers and I am looking at getting the stock system in my 996 upgraded by them in the next couple of months. I spoke to them about using a BOSE sub box as part of the install and they politly said "we couldn't recommend a sub box with such small volume, it simply would not complement the rest of the install" (I'm looking at the level 2, but with higher grade components).
If u speak to top end hifi people, just the mention of the name Bose in the same sentence as hifi will get a laugh.
Bose is more of a 'lifestyle' hifi maker....the sound quality of their products is rubbish (relatively)
Subs are meant to produce lower frequency bass.....you need large (as in at least 5m) rooms to be able to recreate lowish bass, and more to reproduce serious bass (below 50hz - as frequency decreases the wavelength increases). Therefore any bass you will get in a car will always be boomy. Subs need to shift air, so they need to be large (8-10 inch drivers min)...not very convenient........
Very few people will ever have heard a hifi recreating what true bass sounds like (even below 100hz let alone 50hz), so most people think 'boom boom' bass is actually accurate - hence subs being popular (although most aren't true subs at all, and will almost never produce any bass below 50hz or even 100hz)
Another purpose of subs, is that it removes the 'burden' of reproducing bass from your mid/bass drivers, giving improved mid-range clarity/speed/timbre etc, subtleties totally lost in a 'boom boom' car environment.
(p.s I know nothing about car hifi, but it all translates[
].)