You need to put the key in the ignition, turn it to the first step, then remove the battery lead.
As you have found, if you don't do this, the alarm system thinks the car is being stolen, and you are just disconnecting the battery as part of the process of stealing it!
I'm afraid the battery isolator won't help, you are just avoiding the issue. You need to find out why the battery is draining. It should last a few weeks before it gets drained.
Typical drain points can be:
Tracker systems.
Faulty ignition switch (keeping systems running - such as interior fans etc).
Or maybe the battery is at end-of-life?
If you disconnect the battery (whether by the battery, or an isolator) make sure you have any radio code you might need (depends on the model). You might need to reset other systems such as the "top" of electric window positions as well if you disconnect.
This should be in the Boxster section by the way - if an admin can move it....? (this forum is for help with the forum itself, not cars)