It was picked for a reason, or more correctly a number of factors contributed to the end decision. Some of those factors being current tyre technology and others being costs. On a different tack the marketing angle needs to be covered; don't fit the best wheels now as we can add them to a later revision to freshen the model half way through production (why else do so many cars have orange indicators in the early years then clear ones that look much cleaner for the latter half of production, for example?). Last thing I'm going to highlight is that the choice is a compromise as the car has to be, to an extent, all things to all buyers. What I am sure Porsche did with the 924/44/68 range was assume to most people it would be their only car. Many of us have the 944 as a second or third car etc. and even those who have one as a DD are probably a bit more open to a stiff ride etc. than the buyer of an expensive new sportscar was.
Those will all have played a major part in the decision to go 16" rather than 17". Note also that the 968 got 17" from the factory for what is supposedly the best of breed 968 CS (that's not me saying it's best or breed; I think it was pure marketing and don't rate it over any other 968).
Looking at it another way saying you think you should stick to the size of wheels originally fitted is just like saying you should stick to the model of tyre, or the type of wastegate etc. That is probably some people's genuine view, but most see that there is room for improvement, or to shift the compromise more in a direction that suits them.
Bottom line is that there is no "best" wheel size for a 944 (or any car for that matter). I would propose however that the 16" wheel is a good choice for people who want to retain comfort and sweetness of handling or are into originality, whereas 17" is better for maximising performance, fitting bigger brakes etc. 18" is more for show I would say (and that's having driven well in excess of 100,000 miles on 18s on a number of 944s) as it has little to offer over 17" in performance for most cars and is much heavier and still worse at transferring road imperfections to the suspension.